The Summer School provides hands-on training in computational analysis of proteomics data generated by modern mass spectrometers. The practical parts will enable participants to perform sophisticated quantitative data analysis in their own future research using the publicly available MaxQuant and Perseus software.
MaxQuant Summer School 2024 will be in Munich, Germany
Date: September 9 - 13, 2024
Location: Hörsaal "Walther-Straub-Institut für Pharmakologie und Toxikologie", LMU
Address: Schillerstraße 53, 80336 München
Location: Hörsaal "Walther-Straub-Institut für Pharmakologie und Toxikologie", LMU
Address: Schillerstraße 53, 80336 München
Registration is open now!
Please register here: Eventbrite
Plenary speakers
Prof. Dr. Bernhard Küster
TUM School of Life Sciences
Prof. Dr. Karl Helmut Grubmüller
MPI for Multidisciplinary Sciences
Prof. Dr. Enrico Cappellini
University of Copenhagen
Prof. Dr. Maria Robles
LMU Biomedical Center Munich
Schedule for time zone UTC-12
| Time/Day | Sunday, September 08 | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|---|
| 00:00 |
|
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 00:45 |
|
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 01:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 02:00 |
|
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 02:45 |
|
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 03:30 |
|
Q&A | Q&A | Q&A | Q&A | |
| 18:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 19:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
|
| 19:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
|
| 20:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
| 21:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
|
| 21:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
|
| 22:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
|
Schedule for time zone UTC-11
| Time/Day | Sunday, September 08 | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|---|
| 01:00 |
|
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 01:45 |
|
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 02:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 03:00 |
|
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 03:45 |
|
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 04:30 |
|
Q&A | Q&A | Q&A | Q&A | |
| 19:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 20:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
|
| 20:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
|
| 21:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
| 22:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
|
| 22:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
|
| 23:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
|
Schedule for time zone UTC-10
| Time/Day | Sunday, September 08 | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|---|
| 00:30 |
|
Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 02:00 |
|
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 02:45 |
|
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 03:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 04:00 |
|
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 04:45 |
|
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 05:30 |
|
Q&A | Q&A | Q&A | Q&A | |
| 20:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 21:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
|
| 21:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
|
| 22:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
| 23:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
|
| 23:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
|
Schedule for time zone UTC-9
| Time/Day | Sunday, September 08 | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|---|
| 00:00 |
|
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 00:45 |
|
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 01:30 |
|
Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 03:00 |
|
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 03:45 |
|
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 04:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 05:00 |
|
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 05:45 |
|
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 06:30 |
|
Q&A | Q&A | Q&A | Q&A | |
| 21:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 22:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
|
| 22:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
|
| 23:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
Schedule for time zone UTC-8
| Time/Day | Sunday, September 08 | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|---|
| 00:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 01:00 |
|
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 01:45 |
|
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 02:30 |
|
Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 04:00 |
|
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 04:45 |
|
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 05:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 06:00 |
|
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 06:45 |
|
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 07:30 |
|
Q&A | Q&A | Q&A | Q&A | |
| 22:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 23:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
|
| 23:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
|
Schedule for time zone UTC-7
| Time/Day | Sunday, September 08 | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|---|
| 00:00 |
|
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 00:45 |
|
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 01:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 02:00 |
|
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 02:45 |
|
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 03:30 |
|
Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 05:00 |
|
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 05:45 |
|
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 06:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 07:00 |
|
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 07:45 |
|
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 08:30 |
|
Q&A | Q&A | Q&A | Q&A | |
| 23:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
Schedule for time zone UTC-6
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 00:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 01:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 01:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 02:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 03:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 03:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 04:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 06:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 06:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 07:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 08:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 08:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 09:30 | Q&A | Q&A | Q&A | Q&A |
Schedule for time zone UTC-5
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 01:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 02:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 02:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 03:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 04:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 04:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 05:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 07:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 07:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 08:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 09:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 09:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 10:30 | Q&A | Q&A | Q&A | Q&A |
Schedule for time zone UTC-4
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 02:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 03:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 03:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 04:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 05:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 05:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 06:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 08:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 08:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 09:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 10:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 10:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 11:30 | Q&A | Q&A | Q&A | Q&A |
Schedule for time zone UTC-3
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 03:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 04:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 04:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 05:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 06:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 06:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 07:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 09:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 09:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 10:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 11:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 11:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 12:30 | Q&A | Q&A | Q&A | Q&A |
Schedule for time zone UTC-2
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 04:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 05:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 05:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 06:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 07:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 07:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 08:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 10:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 10:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 11:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 12:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 12:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 13:30 | Q&A | Q&A | Q&A | Q&A |
Schedule for time zone UTC-1
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 05:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 06:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 06:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 07:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 08:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 08:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 09:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 11:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 11:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 12:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 13:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 13:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 14:30 | Q&A | Q&A | Q&A | Q&A |
Schedule for time zone UTC+0
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 06:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 07:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 07:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 08:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 09:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 09:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 10:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 12:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 12:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 13:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 14:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 14:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 15:30 | Q&A | Q&A | Q&A | Q&A |
Schedule for time zone UTC+1
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 07:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 08:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 08:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 09:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 10:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 10:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 11:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 13:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 13:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 14:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 15:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 15:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 16:30 | Q&A | Q&A | Q&A | Q&A |
Schedule for time zone UTC+2
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 08:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 09:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 09:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 10:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 11:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 11:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 12:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 14:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 14:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 15:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 16:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 16:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 17:30 | Q&A | Q&A | Q&A | Q&A |
Schedule for time zone UTC+3
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 09:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 10:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 10:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 11:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 12:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 12:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 13:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 15:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 15:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 16:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 17:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 17:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 18:30 | Q&A | Q&A | Q&A | Q&A |
Schedule for time zone UTC+4
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 10:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 11:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 11:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 12:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 13:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 13:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 14:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 16:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 16:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 17:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 18:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 18:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 19:30 | Q&A | Q&A | Q&A | Q&A |
Schedule for time zone UTC+5
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 11:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 12:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 12:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 13:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 14:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 14:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 15:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 17:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 17:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 18:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 19:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 19:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 20:30 | Q&A | Q&A | Q&A | Q&A |
Schedule for time zone UTC+6
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 12:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 13:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 13:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 14:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 15:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 15:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 16:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 18:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 18:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 19:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 20:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 20:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 21:30 | Q&A | Q&A | Q&A | Q&A |
Schedule for time zone UTC+7
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 13:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 14:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 14:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 15:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 16:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 16:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 17:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 19:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 19:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 20:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 21:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 21:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 22:30 | Q&A | Q&A | Q&A | Q&A |
Schedule for time zone UTC+8
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 |
|---|---|---|---|---|---|
| 14:45 | Opening | Announcements | Announcements | Announcements | Announcements |
| 15:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
| 15:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
| 16:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 17:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
| 17:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
| 18:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
| 20:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
| 20:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
| 21:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 22:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 22:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 23:30 | Q&A | Q&A | Q&A | Q&A |
Schedule for time zone UTC+9
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 | Saturday, September 14 |
|---|---|---|---|---|---|---|
| 00:30 |
|
Q&A | Q&A | Q&A | Q&A | |
| 15:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 16:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
|
| 16:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
|
| 17:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
| 18:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
|
| 18:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
|
| 19:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
|
| 21:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
|
| 21:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
|
| 22:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
| 23:00 |
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
|
| 23:45 |
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
Schedule for time zone UTC+10
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 | Saturday, September 14 |
|---|---|---|---|---|---|---|
| 00:00 |
|
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 00:45 |
|
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 01:30 |
|
Q&A | Q&A | Q&A | Q&A | |
| 16:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 17:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
|
| 17:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
|
| 18:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
| 19:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
|
| 19:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
|
| 20:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
|
| 22:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
|
| 22:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
|
| 23:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
Schedule for time zone UTC+11
| Time/Day | Monday, September 09 | Tuesday, September 10 | Wednesday, September 11 | Thursday, September 12 | Friday, September 13 | Saturday, September 14 |
|---|---|---|---|---|---|---|
| 00:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
| 01:00 |
|
T02: MaxQuant DDA intermediate
Shamil Urazbakhtin |
L10: Isobaric labeling
Jinqiu Xiao |
L13: MaxQuant.Live
Christoph Wichmann |
L17: MaxQuant Atlas
Daniela Ferretti |
Q&A |
| 01:45 |
|
L05: Output tables
Carlo De Nart |
T04: Isobaric labeling
Jinqiu Xiao |
Tesorai Search with large pretrained model
Peter Cimermancic |
T10: MaxQuant Atlas
Daniela Ferretti |
|
| 02:30 |
|
Q&A | Q&A | Q&A | Q&A | |
| 17:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
| 18:00 |
L01: Mass spectrometry-based proteomics
Jinqiu Xiao |
L06: DIA identification
Jürgen Cox |
L11: Dependent-peptide search
Pavel Sinitcyn |
L14: PTMs theory
Pelagia Kyriakidou |
T11: Protein isoforms
Pavel Sinitcyn & Helen Hohenthanner |
|
| 18:45 |
L02: Andromeda search engine
Walter Viegener |
L07: DIA quantification & multiplexing
Dmitry Alexeev |
L12: Perseus introduction
Wenjie Bi |
L15: PTMs
Caroline Lennartsson |
Participants presentations |
|
| 19:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
| 20:00 |
L03: MaxQuant DDA workflow
Pelagia Kyriakidou |
L08: Machine learning and spectrum prediction
Shamil Urazbakhtin |
T05: Perseus basics I
Wenjie Bi |
T08: PTMs
Pelagia Kyriakidou |
L18: Cross linking
Walter Viegener |
|
| 20:45 |
L04: Label-free quantification
Jürgen Cox |
T03: DIA
Shamil Urazbakhtin |
T06: Perseus basics II
Wenjie Bi |
L16: Phosphoproteome with Astral
Pavel Sinitcyn |
T12: Cross linking
Walter Viegener |
|
| 21:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
|
| 23:00 |
Bernhard Küster
Keynote speaker |
Helmut Grubmüller
Keynote speaker |
Enrico Cappellini
Keynote speaker |
Maria Robles
Keynote speaker |
T13: Single cell proteomics
Dmitry Alexeev |
|
| 23:45 |
T01: MaxQuant DDA basics
Dmitry Alexeev |
L09: Metaproteomics
Jinqiu Xiao |
T07: Perseus intermediate
Wenjie Bi |
T09: Perseus time-series
Lukas Huschet |
T14: Interactions
Carlo De Nart |
|
Organizing Committee
Dr. Jürgen Cox
MPI of Biochemistry
Prof. Dr. Maria Robles
LMU Biomedical Center Munich
Prof. Dr. Tanja Bange
LMU Biomedical Center Munich
Dr. Jinqiu Xiao
MPI of Biochemistry
Event Curators
Pelagia Kyriakidou
MPI of Biochemistry
Lukas Huschet
LMU Biomedical Center Munich
Carlo De Nart
MPI of Biochemistry
Juan Restrepo Lopez
MPI of Biochemistry
Dmitry Alexeev
MPI of Biochemistry
Shamil Urazbakhtin
MPI of Biochemistry
Walter Viegener
MPI of Biochemistry
Dr. Wenjie Bi
MPI of Biochemistry
Sponsors
Open position for Postdocs
Our group ( CoxLab ) is currently looking for Postdocs. If you have expertise in Computational Biology with a programming background and you want to join our group contact Jürgen Cox: cox@biochem.mpg.de
Summer School Contacts:
For questions send an e-mail to the following address:
summerschool@maxquant.de
Physical address:
Max-Planck-Institute of Biochemistry - Computational Systems Biochemistry
Am Klopferspitz 18, D-82152 Martinsried, Germany